Chemical Derivatization of Peptide Carboxyl Groups for Highly Efficient Electron Transfer Dissociation

The carboxyl groups of tryptic peptides were derivatized with a tertiary or quaternary amine labeling reagent to generate more highly charged peptide ions that fragment efficiently by electron transfer dissociation (ETD). All peptide carboxyl groups—aspartic and glutamic acid side-chains as well as C-termini—were derivatized with an average reaction efficiency of 99 %. This nearly complete labeling avoids making complex peptide mixtures even more complex because of partially-labeled products, and it allows the use of static modifications during database searching. Alkyl tertiary amines were found to be the optimal labeling reagent among the four types tested. Charge states are substantially higher for derivatized peptides: a modified tryptic digest of bovine serum albumin (BSA) generates ~90% of its precursor ions with z? > ?2, compared with less than 40 % for the unmodified sample. The increased charge density of modified peptide ions yields highly efficient ETD fragmentation, leading to many additional peptide identifications and higher sequence coverage (e.g., 70 % for modified versus only 43 % for unmodified BSA). The utility of this labeling strategy was demonstrated on a tryptic digest of ribosomal proteins isolated from yeast cells. Peptide derivatization of this sample produced an increase in the number of identified proteins, a >50 % increase in the sequence coverage of these proteins, and a doubling of the number of peptide spectral matches. This carboxyl derivatization strategy greatly improves proteome coverage obtained from ETD-MS/MS of tryptic digests, and we anticipate that it will also enhance identification and localization of post-translational modifications.

Synthesis of Materials with Self-Ordering Chiral Macromolecules

The present work focuses on chirality, functionalization, and molecular shape to establish links between molecular architecture and the spatial organization of polymer chains in organic materials. The approach used was to synthesize chiral and racemic homologous polymers exhibiting a preference for extended chain conformations and having the strongly dipolar cyano group as a substituent of the stereogenic center. The strong dipole moment at the chiral center offered potential to combine strong long-range forces with chiral recognition. Electron and optical microscopies were our selected tools to probe three-dimensional structures, and nonlinear optics was used to measure the properties of the materials obtained. We found that the relative stereochemistry of the repeat unit dipole impacts significantly on global chain symmetry and its packing mode. Enantiomeric enrichment of chains changed hexagonally packed cylindrical molecules to board-like molecules which pack edge-to-edge in an orthorhombic lattice. Interestingly, enantiomeric enrichment of chains enhanced the second-order nonlinear optical susceptibility of films prepared from these macromolecules.     

Aliphatic Polyester Blends Based upon Poly(Lactic Acid) and Oligomeric Poly(Hexamethylene Succinate)

Abstract

In an attempt to gain a degree of control over the mechanical and degradation properties of poly(lactic acid) [PLA], large-scale efforts are underway to alter the phase morphology of PLA through chemical and physical modification. Consistent with this theme, our work aims to adjust the molecular architecture of highly amorphous PLA with an increasing concentration of hydroxy-terminated oligomeric poly(hexamethylene succinate) [PHS]. Gel-permeation chromatography (GPC) verifies the enhanced presence of PHS in the blends with a concomitant reduction in number-average molecular weight as the weight fraction of PHS is raised from 0.10 to 0.40. Differential scanning calorimetry (DSC) indicates amorphous phase compatibility between PHS and PLA at weight compositions of 10/90 and 20/80. However, as the amount of PHS approaches 30 and 40 wt%, the PHS exhibits the ability to crystallize independently from the induced PLA crystalline phase. Dynamic mechanical thermal analysis (DMTA) illustrates variable behavior of the materials under tension as a consequence of structural alterations generated by the oligoester. Finally, preliminary results suggest that these alterations may suppress the hydrolytic degradation of PLA.     

Novel Copolymers of Styrene. 12. Halogen Ring-Substituted Methyl 2-Cyano-3-Phenyl-2-Propenoates

Electrophilic trisubstituted ethylenes, halogen ring-substituted methyl 2-cyano-3-phenyl-2-propenoates, RPhCH=C(CN)CO₂CH₃ (where R is 3-Br-4-CH₃O, 5-Br-2-CH₃O, 2-F-5-CH₃, 2-F-6-CH₃, 4-F-3-CH₃, 4-F-3-PhO, 2-F-5-I, 2-F-6-I, 2-F₃C, 4-F₃C) were prepared and copolymerized with styrene. The monomers were synthesized by the piperidine catalyzed Knoevenagel condensation of ring-substituted benzaldehydes and methyl cyanoacetate, and characterized by CHN analysis, IR, ¹H and ¹³C-NMR. All the ethylenes were copolymerized with styrene (M₁) in solution with radical initiation (ABCN) at 70°C. The compositions of the copolymers were calculated from nitrogen analysis and the structures were analyzed by IR, ¹H and ¹³C-NMR. The order of relative reactivity (1/r ₁) for the monomers is 2-F-5-CH₃ (6.4) > 4-F-3-PhO (5.6) > 4-F₃C (4.8) > 3-Br-4-CH₃O (3.7) > 2-F-5-I (3.6) > 2-F₃C (2.2) > 2-F-6-I (2.1) > 5-Br-2-CH₃O (1.9) > 4-F-3-CH₃ (1.8) > 2-F-6-CH₃ (1.2). Relatively high T _g of the copolymers in comparison with that of polystyrene indicates a decrease in chain mobility of the copolymer due to the high dipolar character of the trisubstituted ethylene monomer unit. Decomposition of the copolymers in nitrogen occurred in two steps, first in the 200-500°C range with residue (2–21% wt), which then decomposed in the 500–800°C range.     

Novel Copolymers of Vinyl Acetate and Alkyl Ring‐Substituted 2‐Phenyl‐1,1‐dicyanoethylenes

Electrophilic trisubstituted ethylene monomers, alkyl ring‐substituted 2‐phenyl‐1,1‐dicyanoethylenes, RC₆H₄CH?C(CN)₂ (where R is 2‐methyl, 3‐methyl,4‐methyl, 4‐ethyl, 4‐isopropyl, 4‐butyl, and 4‐t‐butyl), were synthesized by piperidine catalyzed Knoevenagel condensation of ring‐substituted benzaldehydes and malononitrile, and characterized by CHN elemental analysis, IR, ¹H‐ and ¹³C‐NMR. Novel copolymers of the ethylenes and vinyl acetate were prepared at equimolar monomer feed composition by solution copolymerization in the presence of a radical initiator (ABCN) at 70°C. The composition of the copolymers was calculated from nitrogen analysis, and the structures were analyzed by IR, ¹H and ¹³C‐NMR, GPC, DSC, and TGA. High T_g of the copolymers, in comparison with that of polyvinyl acetate, indicates a substantial decrease in chain mobility of the copolymer due to the high dipolar character of the trisubstituted ethylene monomer unit. The gravimetric analysis indicated that the copolymers decompose in the 190–700°C range.     

A simple method for methylmercury,inorganic mercury and ethylmercury determination in plasma samples by high performance liquid chromatography–cold-vapor-inductively coupled plasma mass spectrometry

A simple and sensitive method with a fast sample preparation procedure is proposed for the determination of mercury species in plasma/serum. The method combines online high-performance liquid chromatography separation, Hg cold-vapor formation and inductively coupled plasma mass spectrometry detection. Prior to analysis, plasma (250 μL) was accurately pipetted into 15 mL conical tubes. Then, an extractant solution containing mercaptoethanol, L-cysteine and HCl was added to the samples following sonication for 10 min. Quantitative mercury extraction was achieved with the proposed procedure. Separation of mercury species was accomplished in less than 8 min on a C8 reverse phase column with a mobile phase containing 3% v/v methanol + 97% v/v (0.5% v/v 2-mercaptoethanol + 0.05% v/v formic acid). The method detection limits were found to be 12 ng L⁻¹, 5 ng L⁻¹ and 4 ng L⁻¹ for inorganic mercury, ethylmercury and methylmercury, respectively. Method accuracy is traceable to Standard Reference Material (SRM) 966 Toxic Metals in Bovine Blood from NIST. Additional validation was provided by the analysis of a secondary reference serum sample from the INSQ-Canada. Finally, the method was successfully applied for the speciation of mercury in plasma samples collected from volunteers exposed to methylmercury through fish consumption. For the first time to our knowledge, levels of different species of Hg in plasma samples from riverside populations exposed to MeHg were determined.     

Pyrazole‐substituted Near‐infrared Cyanine Dyes Exhibit pH‐dependent Fluorescence Lifetime Properties

Near‐infrared heptamethine cyanine dye is functionalized with pyrazole derivatives at the meso‐position to induce pH‐dependent photophysical properties. The presence of pyrazole unsubstituted at ¹N‐position is essential to induce pH‐dependent fluorescence intensity and lifetime changes in these dyes. Replacement of meso‐chloro group of cyanine dye IR820 with ¹N‐unsubstituted pyrazole resulted in the pH‐dependent fluorescence lifetime changes from 0.93 ns in neutral media to 1.27 ns in acidic media in DMSO. Time‐resolved emission spectra (TRES) revealed that at lower pH, the pyrazole consists of fluorophores with two distinct lifetimes, which cor‐responds to pH‐sensitive and non‐pH‐sensitive species. In contrast, ¹N‐substituted pyrazoles do not exhibit pH response, suggesting excited state electron transfer as the mechanism of pH‐dependent fluorescence lifetime sensitivity for this class of compounds.     

Iron(III) Chloride–Promoted Direct Conversion of Aryl/Alkyl Cyanides to Esters

Aryl/alkyl cyanides were quickly converted into the corresponding esters in the presence of iron(III) chloride in refluxing alcohols with very good yields.     

Synthesis of Benzo[a]Phenanthro[9,10-e]-Cyclooctene

A phenanthrene-fused cyclooctatetraene, namely benzo[a]phenanthro[9,10-e]cyclooctene has been synthesized by employing the “Reich-Paquette” procedure.